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Bus Error 10 Python

Mark as duplicate Convert to a question Link a related branch Link to CVE You are not directly subscribed to this bug's notifications. Not the answer you're looking for? When I parse the MSA file using prody I get a Bus error: 10 Code: from prody import * msa = parseMSA('test_aln.fasta') This outputs the following in my terminal: >>> from python linux embedded share|improve this question asked May 1 at 18:06 jeb 43.6k998120 memtester was a good idea, but you may want to check kernel messages (dmesg). Check This Out

Is there actually an exception and a traceback or does it completely crash and burn? Clustalw Alignment Error In Biopython Hi , I tried the following code to run clustalw . Open django_select2/fields.py. 2. Tophat error on using NONCODE database gtf file.

Hi all. Already have an account? cabbages-and-kings owner Mekire commented Feb 18, 2014 Yeah, no clue.

Do only black holes emit gravitational waves? How I can find the cause for the problems? accessing a memory-mapped file or executing a binary image which has been truncated while the program was running),[2] or because a just-created memory-mapped file cannot be physically allocated, because the disk Make sure you have Django 1.4 installed. 1.

Linux/Intel) that's a different signal. Why is nuclear waste more dangerous than the original nuclear fuel? I used the command below to get column 2,6 and 8 of my vcf file cut -f 2,6,8 my.vcf > out.vc... Now try accessing .

The bug occurs every time. Samtools To Analyze Bwa Output I have a query file with 70,000 lines of sequences and when I do the bwasw each sam output file i... Join them; it only takes a minute: Sign up os x python 2.6 bus error up vote 1 down vote favorite i am getting weird python bus error when building a scoder (scoder) wrote on 2014-10-31: #8 Oh, and is this using a statically linked lxml or does it dynamically link against libxml2 and friends?

  1. At age 25, is it still okay to wear braces to work?
  2. cabbages-and-kings owner Mekire commented Feb 15, 2014 That's strange.
  3. But when I get it once, I get it directly when I try to restart my program.
  4. Why do solar planes have many small propellers instead of fewer large ones?
  5. Don't know why it happens, but thanks for the report none the less. -Mek justinmeister commented Apr 6, 2014 Hey, I figured out what crashes the program on OS X.
  6. bwa mem: paired end reads have different names: Issue with 0.7.10 Hi all,  I am trying to run alignments for paired end MiSeq data and I am getting this error: "...
  7. Nothing else (no traceback).

Note in that issue there is currently no perfect fix for this: we've had to heuristically adjust the maximum default stack size based on experience with different compilers and trying not On many systems (e.g. I have used muscle (3.8) to perform a multiple sequence alignment on 635 tumor suppresso... History Date User Action Args 2012-08-2104:54:30ronaldoussorensetmessages: + msg168736 2012-08-2104:34:03Apple Grewsetmessages: + msg168734 2012-08-2103:05:29ned.deilysetstatus: open -> closedsuperseder: Exceed Recursion Limit in Threadnosy: + ned.deilymessages: + msg168732resolution: duplicatestage: resolved 2012-08-2020:54:09ronaldoussorensetmessages: + msg168701 2012-08-2020:44:28rosslagerwallsetmessages:

ERROR And the selftest stops always at test_callback_register_double (ctypes.test.test_callbacks.SampleCallbacksTestCase) ... http://alltechgossip.com/bus-error/what-is-bus-error-10.html I realise that this is the ipython list and that -- following earlier emails -- it is unlikely that ipython causes such a low-lever error. Please report it to their respective bug tracker. Few follow up questions as I haven't been able to duplicate this yet: Operating system, Exact Python version, exact Pygame version?

Countries where lecture duration does not exceed one hour Different RAID settings for different folders on the same logical drive Head, Shoulders, Knees and Toes, Knees and Toes "International" vs "Foreign" I can try to get it to work with python 3.3 and see what happens. IPython 0.6.12 -- An enhanced Interactive Python. ? -> Introduction to IPython's features. %magic -> Information about IPython's 'magic' % functions. this contact form Did you do a 'from test import testall' in Python or 'make test' from the shell ?

more stack exchange communities company blog Stack Exchange Inbox Reputation and Badges sign up log in tour help Tour Start here for a quick overview of the site Help Center Detailed Biopython: Getting Positions In A Multiple Sequence Alignment From A Reference Sequence In The Alignment Ok, so I am writing an application that examines mutations at user defined positions within an cd to django-select2/testapp folder. 3.

prints more.

I'm not sure why that line doesn't cause a crash in python 3.x, but does in python 2.x. Similarly, if multi-byte accesses must be 32-bit aligned, addresses 0, 4, 8, 12, and so on would be considered aligned and therefore accessible, and all addresses in between would be considered You signed out in another tab or window. In my experience SIGBUS has always been an alignment error.

You should contact the developer. samtools/bcftools strange (error ?) lack of call Hi all, I got a strange lack of call when I used samtolls mpileup + bcftools to call my SNP (ver... thanks python osx osx-snow-leopard macports share|improve this question edited Mar 8 '10 at 2:48 Jon Seigel 9,56254381 asked Nov 25 '09 at 15:02 kevin 1,14761931 Well, you're accessing memory navigate here Administration User List Committer List Help Tracker Documentation Tracker Development Report Tracker Problem Issue15739 classification Title: Python crashes with "Bus error: 10" Type: crash Stage: resolved Components: macOS Versions: Python 2.7,

Uncomment line 156 and comment lines 158 and 159. 4. share|improve this answer answered Jun 14 at 16:30 Kamyar Souri 1,2341023 add a comment| Your Answer draft saved draft discarded Sign up or log in Sign up using Google Sign Is your entire program actually written in Python, or is Python just being used as a test framework? Systems tolerate this inefficient algorithm, as it is an essential feature for most software, especially string processing.

asked 6 months ago viewed 336 times active 5 months ago Upcoming Events 2016 Community Moderator Election ends in 4 days Related 625How to determine the variable type in Python?863Determine the Note that this only covers physical memory addresses. The reason I ask this is that the crash report has a deeply nested call stack and there used to be a bug where new threads were created with a too Changed in lxml: status: New → Invalid See full activity log To post a comment you must log in.

Printing the low order bits of the address shows that it is not aligned to a word boundary ("dword" using x86 terminology). Comment line 128, uncomment line 129. 3. The last adjustment was released in 2.7.2, so presumably not in the compiler used for the Apple-supplied Python 2.7.1 in Lion. samtools mpileup - how to extract the alternative allele counts for *each* alternative base Hello there I am running samtools mpileup and get an output for the requested positions.

Report a bug This report contains Public information Edit Everyone can see this information. Subscribing... It is possible for CPUs to support this, but this functionality is rarely required directly at the machine code level, thus CPU designers normally avoid implementing it and instead issue bus Browse other questions tagged python linux embedded or ask your own question.

Trying to access an undefined virtual memory address is generally considered to be a segmentation fault rather than a bus error, though if the MMU is separate, the processor can't tell